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Ionis Pharmaceuticals Inc. – ‘10-K’ for 12/31/21 – ‘EX-31.1’

On:  Thursday, 2/24/22, at 5:38pm ET   ·   As of:  2/25/22   ·   For:  12/31/21   ·   Accession #:  874015-22-79   ·   File #:  0-19125

Previous ‘10-K’:  ‘10-K’ on 2/24/21 for 12/31/20   ·   Next:  ‘10-K’ on 2/22/23 for 12/31/22   ·   Latest:  ‘10-K’ on 2/21/24 for 12/31/23   ·   54 References:   

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  As Of               Filer                 Filing    For·On·As Docs:Size

 2/25/22  Ionis Pharmaceuticals Inc.        10-K       12/31/21  106:22M

Annual Report   —   Form 10-K

Filing Table of Contents

Document/Exhibit                   Description                      Pages   Size 

 1: 10-K        Ionis Pharmaceuticals, Inc. 10-K 12-31-2021         HTML   2.36M 
 2: EX-4.11     Instrument Defining the Rights of Security Holders  HTML     47K 
                -- exhibit4-11                                                   
 3: EX-10.19    Material Contract -- exhibit10-19                   HTML     89K 
 4: EX-10.60    Material Contract -- exhibit10-60                   HTML     65K 
 5: EX-10.83    Material Contract -- exhibit10-83                   HTML     48K 
 6: EX-10.84    Material Contract -- exhibit10-84                   HTML    830K 
 7: EX-21.1     Subsidiaries List -- exhibit21-1                    HTML     30K 
 8: EX-23.1     Consent of Expert or Counsel -- exhibit23-1         HTML     30K 
 9: EX-31.1     Certification -- §302 - SOA'02 -- exhibit31-1       HTML     36K 
10: EX-31.2     Certification -- §302 - SOA'02 -- exhibit31-2       HTML     36K 
11: EX-32       Certification -- §906 - SOA'02 -- exhibit32-1       HTML     32K 
17: R1          Document and Entity Information                     HTML     97K 
18: R2          Consolidated Balance Sheets                         HTML    138K 
19: R3          Consolidated Balance Sheets (Parenthetical)         HTML     48K 
20: R4          Consolidated Statements of Operations               HTML    129K 
21: R5          Consolidated Statements of Comprehensive Income     HTML     62K 
                (Loss)                                                           
22: R6          Consolidated Statements of Stockholders' Equity     HTML    110K 
23: R7          Consolidated Statements of Cash Flows               HTML    168K 
24: R8          Consolidated Statements of Cash Flows               HTML     41K 
                (Parenthetical)                                                  
25: R9          Organization and Significant Accounting Policies    HTML    357K 
26: R10         Investments                                         HTML    156K 
27: R11         Long-Term Obligations and Commitments               HTML    109K 
28: R12         Stockholders' Equity                                HTML    130K 
29: R13         Income Taxes                                        HTML    176K 
30: R14         Collaborative Arrangements and Licensing            HTML    163K 
                Agreements                                                       
31: R15         Akcea Merger                                        HTML     49K 
32: R16         Severance and Retention Costs related to our        HTML     58K 
                Restructured Operations                                          
33: R17         Employment Benefits                                 HTML     35K 
34: R18         Legal Proceedings                                   HTML     35K 
35: R19         Fourth Quarter Financial Data (Unaudited)           HTML     82K 
36: R20         Organization and Significant Accounting Policies    HTML    415K 
                (Policies)                                                       
37: R21         Organization and Significant Accounting Policies    HTML    267K 
                (Tables)                                                         
38: R22         Investments (Tables)                                HTML    158K 
39: R23         Long-Term Obligations and Commitments (Tables)      HTML    101K 
40: R24         Stockholders' Equity (Tables)                       HTML    105K 
41: R25         Income Taxes (Tables)                               HTML    175K 
42: R26         Collaborative Arrangements and Licensing            HTML     94K 
                Agreements (Tables)                                              
43: R27         Akcea Merger (Tables)                               HTML     44K 
44: R28         Severance and Retention Costs related to our        HTML     57K 
                Restructured Operations (Tables)                                 
45: R29         Fourth Quarter Financial Data (Unaudited) (Tables)  HTML     82K 
46: R30         Organization and Significant Accounting Policies,   HTML     35K 
                Basis of Presentation (Details)                                  
47: R31         Organization and Significant Accounting Policies,   HTML     78K 
                Basic Net Income (Loss) per Share (Details)                      
48: R32         Organization and Significant Accounting Policies,   HTML    105K 
                Diluted Net Income (Loss) per Share (Details)                    
49: R33         Organization and Significant Accounting Policies,   HTML    113K 
                Revenue Recognition (Details)                                    
50: R34         Organization and Significant Accounting Policies,   HTML     42K 
                Contracts Receivable (Details)                                   
51: R35         Organization and Significant Accounting Policies,   HTML     32K 
                Deferred Revenue (Details)                                       
52: R36         Organization and Significant Accounting Policies,   HTML     59K 
                Research, Development and Patent Expenses                        
                (Details)                                                        
53: R37         Organization and Significant Accounting Policies,   HTML     40K 
                Accrued Liabilities (Details)                                    
54: R38         Organization and Significant Accounting Policies,   HTML     37K 
                Noncontrolling Interest in Akcea Therapeutics,                   
                Inc. (Details)                                                   
55: R39         Organization and Significant Accounting Policies,   HTML     45K 
                Cash, Cash Equivalents and Investments (Details)                 
56: R40         Organization and Significant Accounting Policies,   HTML     44K 
                Inventory Valuation (Details)                                    
57: R41         Organization and Significant Accounting Policies,   HTML     67K 
                Property, Plant and Equipment (Details)                          
58: R42         Organization and Significant Accounting Policies,   HTML     32K 
                Long-Lived Assets (Details)                                      
59: R43         Organization and Significant Accounting Policies,   HTML     65K 
                Stock-Based Compensation Expense (Details)                       
60: R44         Organization and Significant Accounting Policies,   HTML     66K 
                Accumulated Other Comprehensive Loss (Details)                   
61: R45         Organization and Significant Accounting Policies,   HTML    205K 
                Convertible Debt (Details)                                       
62: R46         Organization and Significant Accounting Policies,   HTML     36K 
                Call Spread (Details)                                            
63: R47         Organization and Significant Accounting Policies,   HTML     32K 
                Segment Information (Details)                                    
64: R48         Organization and Significant Accounting Policies,   HTML    127K 
                Fair Value Measurements (Details)                                
65: R49         Investments, Contract Maturity of                   HTML     50K 
                Available-for-Sale Securities (Details)                          
66: R50         Investments, Summary of Investments (Details)       HTML    108K 
67: R51         Investments, Investments Temporarily Impaired       HTML     52K 
                (Details)                                                        
68: R52         Long-Term Obligations and Commitments, Long-Term    HTML     56K 
                Obligations (Details)                                            
69: R53         Long-Term Obligations and Commitments, Convertible  HTML    101K 
                Debt and Call Spread (Details)                                   
70: R54         Long-Term Obligations and Commitments, Research     HTML     48K 
                and Development and Manufacturing Facilities                     
                (Details)                                                        
71: R55         Long-Term Obligations and Commitments, Maturity     HTML     58K 
                Schedules for Annual Debt and Other Obligations                  
                (Details)                                                        
72: R56         Long-Term Obligations and Commitments, Operating    HTML     86K 
                Leases (Details)                                                 
73: R57         Long-Term Obligations and Commitments, Future       HTML     53K 
                Payments for Operating Lease Liabilities (Details)               
74: R58         Stockholders' Equity, Preferred and Common Stock    HTML     59K 
                (Details)                                                        
75: R59         Stockholders' Equity, Share Repurchase Program      HTML     37K 
                (Details)                                                        
76: R60         Stockholders' Equity, Stock Plans (Details)         HTML    134K 
77: R61         Stockholders' Equity, Stock Option Activity         HTML     86K 
                (Details)                                                        
78: R62         Stockholders' Equity, Restricted Stock Unit         HTML     62K 
                Activity (Details)                                               
79: R63         Stockholders' Equity, Stock-based Compensation      HTML     47K 
                Expense (Details)                                                
80: R64         Stockholders' Equity, Stock-based Valuation         HTML     48K 
                Information (Details)                                            
81: R65         Income Taxes, Income (Loss) Before Income Taxes     HTML     40K 
                (Details)                                                        
82: R66         Income Taxes, Income Tax Expense (Benefit)          HTML     55K 
                (Details)                                                        
83: R67         Income Taxes, Reconciliation of Statutory to        HTML    116K 
                Effective Tax Rate (Details)                                     
84: R68         Income Taxes, Deferred Tax Assets and Liabilities   HTML     64K 
                (Details)                                                        
85: R69         Income Taxes, Tax Credit Carryforwards (Details)    HTML     41K 
86: R70         Income Taxes, Gross Unrecognized Tax Benefits       HTML     44K 
                (Details)                                                        
87: R71         Collaborative Arrangements and Licensing            HTML    206K 
                Agreements, Biogen (Details)                                     
88: R72         Collaborative Arrangements and Licensing            HTML    121K 
                Agreements, AstraZeneca (Details)                                
89: R73         Collaborative Arrangements and Licensing            HTML     90K 
                Agreements, Bayer (Details)                                      
90: R74         Collaborative Arrangements and Licensing            HTML     69K 
                Agreements, GSK (Details)                                        
91: R75         Collaborative Arrangements and Licensing            HTML     99K 
                Agreements, Novartis (Details)                                   
92: R76         Collaborative Arrangements and Licensing            HTML     96K 
                Agreements, Roche (Details)                                      
93: R77         Collaborative Arrangements and Licensing            HTML     33K 
                Agreements, PTC Therapeutics (Details)                           
94: R78         Collaborative Arrangements and Licensing            HTML     43K 
                Agreements, Bicycle License Agreement (Details)                  
95: R79         Collaborative Arrangements and Licensing            HTML     52K 
                Agreements, Alnylam Pharmaceuticals, Inc.                        
                (Details)                                                        
96: R80         Akcea Merger (Details)                              HTML     74K 
97: R81         Severance and Retention Costs related to our        HTML     49K 
                Restructured Operations, Restructured European                   
                Operations (Details)                                             
98: R82         Severance and Retention Costs related to our        HTML     43K 
                Restructured Operations, Restructured North                      
                American TEGSEDI Operations (Details)                            
99: R83         Employment Benefits (Details)                       HTML     37K 
100: R84         Legal Proceedings (Details)                         HTML     32K  
101: R85         Fourth Quarter Financial Data (Unaudited)           HTML    156K  
                (Details)                                                        
104: XML         IDEA XML File -- Filing Summary                      XML    194K  
102: XML         XBRL Instance -- form10k_htm                         XML   4.70M  
103: EXCEL       IDEA Workbook of Financial Reports                  XLSX    175K  
13: EX-101.CAL  XBRL Calculations -- ions-20211231_cal               XML    335K 
14: EX-101.DEF  XBRL Definitions -- ions-20211231_def                XML   1.79M 
15: EX-101.LAB  XBRL Labels -- ions-20211231_lab                     XML   3.59M 
16: EX-101.PRE  XBRL Presentations -- ions-20211231_pre              XML   2.22M 
12: EX-101.SCH  XBRL Schema -- ions-20211231                         XSD    308K 
105: JSON        XBRL Instance as JSON Data -- MetaLinks              624±   948K  
106: ZIP         XBRL Zipped Folder -- 0000874015-22-000079-xbrl      Zip   1.32M  


‘EX-31.1’   —   Certification — §302 – SOA’02 — exhibit31-1


This Exhibit is an HTML Document rendered as filed.  [ Alternative Formats ]



 C: 
Exhibit 31.1

CERTIFICATION

I, Brett P. Monia, certify that:

1.
I have reviewed this Annual Report on Form 10-K of Ionis Pharmaceuticals, Inc.;

2.
Based on my knowledge, this annual report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this annual report;

3.
Based on my knowledge, the consolidated financial statements, and other financial information included in this annual report, fairly present in all material respects the financial condition, consolidated results of operations and consolidated cash flows of the registrant as of, and for, the periods presented in this annual report;

4.
The registrant’s other certifying officer and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f)) for the registrant and have:

a)
Designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within those entities, particularly during the period in which this report is being prepared;

b)
Designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for external purposes in accordance with generally accepted accounting principles;

c)
Evaluated the effectiveness of the registrant’s disclosure controls and procedures and presented in this report our conclusions about the effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and

d)
Disclosed in this report any change in the registrant’s internal control over financial reporting that occurred during the registrant’s most recent fiscal quarter (the registrant’s fourth fiscal quarter in the case of an annual report) that has materially affected, or is reasonably likely to materially affect, the registrant’s internal control over financial reporting; and

5.
The registrant’s other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the registrant’s auditors and the audit committee of registrant’s board of directors (or persons performing the equivalent functions):

a)
All significant deficiencies and material weaknesses in the design or operation of internal control over financial reporting which are reasonably likely to adversely affect the registrant’s ability to record, process, summarize and report financial information; and

b)
Any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant’s internal control over financial reporting.
  
 
 
 
 
 
Chief Executive Officer
 


Dates Referenced Herein   and   Documents Incorporated by Reference

This ‘10-K’ Filing    Date    Other Filings
Filed as of:2/25/22
Filed on:2/24/228-K
For Period end:12/31/215
 List all Filings 


2 Subsequent Filings that Reference this Filing

  As Of               Filer                 Filing    For·On·As Docs:Size             Issuer                      Filing Agent

 2/21/24  Ionis Pharmaceuticals Inc.        10-K       12/31/23  103:18M
 2/22/23  Ionis Pharmaceuticals Inc.        10-K       12/31/22  110:25M


52 Previous Filings that this Filing References

  As Of               Filer                 Filing    For·On·As Docs:Size             Issuer                      Filing Agent

11/03/21  Ionis Pharmaceuticals Inc.        10-Q        9/30/21   62:11M
 8/04/21  Ionis Pharmaceuticals Inc.        10-Q        6/30/21   60:9M
 5/05/21  Ionis Pharmaceuticals Inc.        10-Q        3/31/21   57:8M
 4/23/21  Ionis Pharmaceuticals Inc.        DEF 14A     6/02/21    1:6.7M                                   Broadridge Fin’l So… Inc
 4/13/21  Ionis Pharmaceuticals Inc.        8-K:1,2,3,8 4/06/21   15:1.5M                                   Donnelley … Solutions/FA
 3/29/21  Ionis Pharmaceuticals Inc.        8-K:5,9     3/26/21   12:505K                                   Broadridge Fin’l So… Inc
 2/24/21  Ionis Pharmaceuticals Inc.        10-K       12/31/20  111:23M
12/31/20  Ionis Pharmaceuticals Inc.        S-8        12/31/20    7:376K                                   Broadridge Fin’l So… Inc
 8/31/20  Ionis Pharmaceuticals Inc.        8-K:1,8,9   8/30/20   12:712K                                   Donnelley … Solutions/FA
 8/07/20  Ionis Pharmaceuticals Inc.        S-8         8/10/20    5:159K                                   Broadridge Fin’l So… Inc
 8/05/20  Ionis Pharmaceuticals Inc.        10-Q        6/30/20   59:10M
 4/24/20  Ionis Pharmaceuticals Inc.        DEF 14A     6/04/20    1:6.1M                                   Broadridge Fin’l So… Inc
 3/02/20  Akcea Therapeutics, Inc.          10-K       12/31/19  113:18M                                    ActiveDisclosure/FA
 3/02/20  Ionis Pharmaceuticals Inc.        10-K       12/31/19  101:22M                                    Broadridge Fin’l So… Inc
12/23/19  Ionis Pharmaceuticals Inc.        8-K:1,2,3,912/19/19   11:1M                                     Broadridge Fin’l So… Inc
12/12/19  Ionis Pharmaceuticals Inc.        8-K:2,3,8,912/11/19   13:1M                                     Broadridge Fin’l So… Inc
11/06/19  Ionis Pharmaceuticals Inc.        10-Q        9/30/19   66:10M
 8/08/19  Ionis Pharmaceuticals Inc.        10-Q        6/30/19   60:10M                                    Broadridge Fin’l So… Inc
 5/09/19  Akcea Therapeutics, Inc.          10-Q        3/31/19   70:7.7M                                   ActiveDisclosure/FA
 3/26/19  Ionis Pharmaceuticals Inc.        8-K:5,9     3/22/19    4:188K                                   Broadridge Fin’l So… Inc
 3/01/19  Ionis Pharmaceuticals Inc.        10-K       12/31/18  103:21M
11/06/18  Ionis Pharmaceuticals Inc.        10-Q        9/30/18   61:10M
10/19/18  Ionis Pharmaceuticals Inc.        8-K:5,9    10/18/18    2:190K                                   Broadridge Fin’l So… Inc
 8/07/18  Ionis Pharmaceuticals Inc.        10-Q        6/30/18   62:11M
 5/07/18  Ionis Pharmaceuticals Inc.        10-Q        3/31/18   60:8.9M
 2/28/18  Ionis Pharmaceuticals Inc.        10-K       12/31/17  109:18M
 7/21/17  Ionis Pharmaceuticals Inc.        8-K:1,2,9   7/18/17    7:2.6M                                   Broadridge Fin’l So… Inc
 5/09/17  Ionis Pharmaceuticals Inc.        10-Q        3/31/17   52:7M
 3/27/17  Akcea Therapeutics, Inc.          S-1                   20:7.3M                                   Toppan Merrill-FA
 3/01/17  Ionis Pharmaceuticals Inc.        10-K       12/31/16  102:14M                                    Broadridge Fin’l So… Inc
 5/05/16  Ionis Pharmaceuticals Inc.        10-Q        3/31/16   53:5.9M
12/18/15  Ionis Pharmaceuticals Inc.        8-K:5,9    12/18/15    3:255K                                   Broadridge Fin’l So… Inc
11/09/15  Ionis Pharmaceuticals Inc.        10-Q        9/30/15   59:8.6M
 8/05/15  Ionis Pharmaceuticals Inc.        10-Q        6/30/15   58:8.6M
 5/05/15  Ionis Pharmaceuticals Inc.        10-Q        3/31/15   54:8M
 3/02/15  Ionis Pharmaceuticals Inc.        10-K       12/31/14   97:20M                                    Broadridge Fin’l So… Inc
11/21/14  Ionis Pharmaceuticals Inc.        8-K:1,2,3,911/17/14    2:951K                                   Toppan Merrill/FA
11/07/14  Ionis Pharmaceuticals Inc.        10-Q        9/30/14   59:8.3M
 8/04/14  Ionis Pharmaceuticals Inc.        10-Q        6/30/14   52:8.4M                                   Broadridge Fin’l So… Inc
 4/25/14  Ionis Pharmaceuticals Inc.        DEF 14A     6/10/14    1:1.9M                                   Broadridge Fin’l So… Inc
11/05/13  Ionis Pharmaceuticals Inc.        10-Q        9/30/13   52:11M                                    Toppan Merrill/FA
 8/06/13  Ionis Pharmaceuticals Inc.        10-Q        6/30/13   83:15M                                    Toppan Merrill/FA
 2/28/13  Ionis Pharmaceuticals Inc.        10-K       12/31/12   79:19M                                    Toppan Merrill/FA
 8/06/12  Ionis Pharmaceuticals Inc.        10-Q        6/30/12   46:8.8M                                   Toppan Merrill/FA
 5/09/12  Ionis Pharmaceuticals Inc.        10-Q        3/31/12   41:8.2M                                   Toppan Merrill/FA
 4/16/12  Ionis Pharmaceuticals Inc.        DEF 14A     6/07/12    1:1.2M                                   Toppan Merrill/FA
11/08/11  Ionis Pharmaceuticals Inc.        10-Q        9/30/11   42:8.2M                                   Toppan Merrill/FA
 8/08/11  Ionis Pharmaceuticals Inc.        S-8         8/08/11    5:287K                                   Toppan Merrill/FA
 8/08/11  Ionis Pharmaceuticals Inc.        10-Q        6/30/11   43:5.7M                                   Toppan Merrill/FA
 5/07/10  Ionis Pharmaceuticals Inc.        10-Q        3/31/10    9:3.7M                                   Toppan Merrill/FA
 5/12/08  Ionis Pharmaceuticals Inc.        10-Q        3/31/08    9:3.5M                                   Toppan Merrill/FA
12/13/00  Ionis Pharmaceuticals Inc.        8-K:5,7    12/08/00    5:207K                                   Toppan Merrill-FA2/FA
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Filing Submission 0000874015-22-000079   –   Alternative Formats (Word / Rich Text, HTML, Plain Text, et al.)

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