Codexis Inc – ‘S-1’ on 12/28/09

On:  Monday, 12/28/09, at 5:00pm ET   ·   Accession #:  1193125-9-260412   ·   File #:  333-164044

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Registration Statement (General Form)   —   Form S-1
Filing Table of Contents

Document/Exhibit                   Description                      Pages   Size 

 1: S-1         Registration Statement (General Form)               HTML   1.99M 
 2: EX-3.1      Seventh Amended and Restated Certificate of         HTML    118K 
                          Incorporation                                          
 3: EX-3.3      Amended and Restated Bylaws of the Registrant, as   HTML    148K 
                          Currently in Effect                                    
 4: EX-4.2      Fifth Amended and Restated Investor Rights          HTML    210K 
                          Agreement                                              
 5: EX-4.3      Form of Warrant to Purchase Shares of Common Stock  HTML     49K 
 6: EX-4.4      Warrant to Purchase Shares of Common Stock          HTML     62K 
 7: EX-4.5      Form of Warrant to Purchase Shares of Series D      HTML     54K 
                          Preferred Stock - as of 5/25/2006                      
 8: EX-4.6      Form of Warrant to Purchase Shares of Series D      HTML     67K 
                          Preferred Stock - as of 9/28/2007                      
 9: EX-4.7      Warrant to Purchase Shares of Common Stock Issued   HTML     80K 
                          to Alexandria Equities, LLC                            
10: EX-4.8      Registration Rights Agreement                       HTML     73K 
25: EX-10.10    2002 Stock Plan, as Amended, and Form of Stock      HTML    220K 
                          Option Agreement                                       
26: EX-10.12A   Offer Letter - Alan Shaw                            HTML     25K 
27: EX-10.12B   Change in Control Agreement - Alan Shaw             HTML    103K 
28: EX-10.13A   Offer Letter Agreement - Robert S. Beuil            HTML     27K 
29: EX-10.13B   Change in Control Agreement - Robert S. Breuil      HTML     45K 
30: EX-10.13C   Separation Agreement - Robert S. Breuil             HTML     62K 
31: EX-10.14A   Offer Letter Agreement - Douglas T. Sheehy          HTML     33K 
32: EX-10.14B   Chang in Control Agreement - Douglas T. Sheehy      HTML    103K 
33: EX-10.15    Offer Letter Agreement - David L. Anton             HTML     27K 
34: EX-10.16    Employment Contract - Peter Seufer-Wasserthal       HTML     41K 
35: EX-10.18    Form of Indemnification Agreement                   HTML     55K 
11: EX-10.1A    Loan and Security Agreement                         HTML    314K 
12: EX-10.1B    First Amendment to Loan and Security Agreement      HTML     45K 
13: EX-10.2A    License Agreement                                   HTML    152K 
14: EX-10.2B    Amendment No. 1 to the Maxygen License              HTML     77K 
15: EX-10.2C    Amendment No. 2 to the Maxygen License              HTML     18K 
16: EX-10.2D    Amendment No. 3 to the Maxygen License              HTML     75K 
17: EX-10.2E    Side Letter - Dated February 18, 2005.              HTML     17K 
18: EX-10.2F    Side Letter - Dated September 11, 2007              HTML     20K 
19: EX-10.2G    Side Letter - Dated September 24, 2007              HTML     20K 
20: EX-10.8A    Lease Agreement                                     HTML    305K 
21: EX-10.8B    Amendment to Lease Agreement - June 1, 2004         HTML     23K 
22: EX-10.8C    Amendment to Lease Agreement - March 9, 2007        HTML     71K 
23: EX-10.8D    Amendment to Lease Agreement - March 31, 2008       HTML    149K 
24: EX-10.9     Master Security Agreement                           HTML    151K 
36: EX-21       List of Subsidiaries                                HTML     13K 
37: EX-23.1     Consent of Independent Public Accounting Firm       HTML     12K 

        

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