Registration Statement (General Form) — Form S-1 Filing Table of Contents
Document/ExhibitDescriptionPagesSize
1: S-1 Registration Statement (General Form) HTML 1.99M
2: EX-3.1 Seventh Amended and Restated Certificate of HTML 118K
Incorporation
3: EX-3.3 Amended and Restated Bylaws of the Registrant, as HTML 148K
Currently in Effect
4: EX-4.2 Fifth Amended and Restated Investor Rights HTML 210K
Agreement
5: EX-4.3 Form of Warrant to Purchase Shares of Common Stock HTML 49K
6: EX-4.4 Warrant to Purchase Shares of Common Stock HTML 62K
7: EX-4.5 Form of Warrant to Purchase Shares of Series D HTML 54K
Preferred Stock - as of 5/25/2006
8: EX-4.6 Form of Warrant to Purchase Shares of Series D HTML 67K
Preferred Stock - as of 9/28/2007
9: EX-4.7 Warrant to Purchase Shares of Common Stock Issued HTML 80K
to Alexandria Equities, LLC
10: EX-4.8 Registration Rights Agreement HTML 73K
25: EX-10.10 2002 Stock Plan, as Amended, and Form of Stock HTML 220K
Option Agreement
26: EX-10.12A Offer Letter - Alan Shaw HTML 25K
27: EX-10.12B Change in Control Agreement - Alan Shaw HTML 103K
28: EX-10.13A Offer Letter Agreement - Robert S. Beuil HTML 27K
29: EX-10.13B Change in Control Agreement - Robert S. Breuil HTML 45K
30: EX-10.13C Separation Agreement - Robert S. Breuil HTML 62K
31: EX-10.14A Offer Letter Agreement - Douglas T. Sheehy HTML 33K
32: EX-10.14B Chang in Control Agreement - Douglas T. Sheehy HTML 103K
33: EX-10.15 Offer Letter Agreement - David L. Anton HTML 27K
34: EX-10.16 Employment Contract - Peter Seufer-Wasserthal HTML 41K
35: EX-10.18 Form of Indemnification Agreement HTML 55K
11: EX-10.1A Loan and Security Agreement HTML 314K
12: EX-10.1B First Amendment to Loan and Security Agreement HTML 45K
13: EX-10.2A License Agreement HTML 152K
14: EX-10.2B Amendment No. 1 to the Maxygen License HTML 77K
15: EX-10.2C Amendment No. 2 to the Maxygen License HTML 18K
16: EX-10.2D Amendment No. 3 to the Maxygen License HTML 75K
17: EX-10.2E Side Letter - Dated February 18, 2005. HTML 17K
18: EX-10.2F Side Letter - Dated September 11, 2007 HTML 20K
19: EX-10.2G Side Letter - Dated September 24, 2007 HTML 20K
20: EX-10.8A Lease Agreement HTML 305K
21: EX-10.8B Amendment to Lease Agreement - June 1, 2004 HTML 23K
22: EX-10.8C Amendment to Lease Agreement - March 9, 2007 HTML 71K
23: EX-10.8D Amendment to Lease Agreement - March 31, 2008 HTML 149K
24: EX-10.9 Master Security Agreement HTML 151K
36: EX-21 List of Subsidiaries HTML 13K
37: EX-23.1 Consent of Independent Public Accounting Firm HTML 12K
EX-23.1 — Consent of Independent Public Accounting Firm
Consent of Independent Registered Public Accounting Firm
We consent
to the reference to our firm under the caption “Experts” and to the use of our report dated April 28, 2009 in the Registration Statement (Form S-1) and related Prospectus of Codexis, Inc. for the registration of its common stock.
